This is a bit anecdotal, but maybe worth sharing. When I had my GT86 I don't remember initially having much of a problem with a jerky throttle. A little sensitive sometimes, but nothing worth mentioning.
After about 4 years, I had it modified - new exhaust manifold/cat, and remapped with an Ecutek tune at Abbey Motorsport. Great upgrade, got rid of the torque dip, but I then started suffering with an issue very much like what I have inthe GR86, but worse - most of the time alright, but occasional, a bit of kangarooing. Most noticeable at part throttle and slower speeds. Quite often I'd slow down as turning into a junction, drop into second, and as I was accelerating again, I'd feel jerkiness as if my foot was shaking, even though it was dead steady on the pedal. This was with the clutch full engage too, so definitely all throttle.
I went back to Abbey, thinking perhaps it was just the remap that needed fine tuning, but they could find no issue with the fuelling, the throttle mapping, nothing. All seemed to be good, but Mark came out with me in the car and he noticed it too. I ended up leaving the car with them for a week or so while they did some data logging, and the only thing they could find was that there was a bit of a voltage spike coming from the throttle pedal (afterall, it's just a potentiometer). They ended up swapping the throttle pedal from their development car into mine and hey presto....the issue went away.
Now I'd already driven the car for 4 years with the original pedal, but we surmised that perhaps it was only after the remap, when the car was given a boost in torque, that it came to be something I could feel. Anyway, the point of all this rambling is that perhaps the issue is the same with the GR - perhaps it's just a case of the throttle pedal not being the most rigorously engineered thing in the world, and now that the GR is develops more power than it's predecessor, any issue with a less than perfect throttle input voltage gets exacerbated and felt as a jerkiness in acceleration sometimes, even with a steady and controlled right-foot. It might also explain why some people never have an issue - perhaps they are simply lucky enough to have been given a car where the pedal wasn't manufactured on a Friday afternoon
Just some food for thought, because as I say, the symptoms I feel are very much like what I had with the GT after it was modified, but not as bad.